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altree-convert.1p
Langue: en
Version: 2006-01-10 (debian - 07/07/09)
Section: 1 (Commandes utilisateur)
Sommaire
NAME
altree-convert - Title...SYNOPSIS
altree-convert [options]Options: --version program version --short-help|h brief help message --help help message with options descriptions --man full documentation --first-input-file|i input file 1 --second-input-file|j input file 2 (not mandatory) --output-file|o output file --case-control-output|c output containing the nb cases/controls --data-type|t DNA|SNP --phylo-prog|p PAUP|PHYLIP --reconstruct-prog|r PHASE|FAMHAP
OPTIONS
- --version
- Print the program version and exits.
- --short-help
- Print a brief help message and exits.
- --help
- Print a help message with options descriptions and exits.
- --man
- Prints the manual page and exits.
- --first-input-file|i
- Input file 1 (output of the haplotype reconstruction program)
- --second-input-file|j
- Input file 2 (second output of famhap or file containig the disease status)
- --output-file|o
- Output file
- --case-control-output|c
- Output file containing the number of cases and controls carrying each haplotype
- --data-type|t "DNA"|"SNP"
- Type of data: DNA (ATGCU) or SNP (0-1)
- --phylo-prog|p "phylip"|"paup"
- Phylogeny reconstruction program
- reconstruct-prog|r "famhap|phase"
- Haplotype reconstruction program
DESCRIPTION
This program will read the given input file(s) and generate an input file for the phylogenetic reconstruction software paup or phylip/pamlContenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre