bp_download_query_genbank.1p

Langue: en

Autres versions - même langue

Version: 2010-05-19 (ubuntu - 24/10/10)

Section: 1 (Commandes utilisateur)

NAME

download_query_genbank - script to query Genbank and retrieve records

USAGE

  download_query_genbank --query "Neurospora[ORGN]" --db nucest -o Ncrassa_ESTs.fa --format fasta
 
  download_query_genbank --queryfile 'filewithquery' --db nucest -o Ncrassa_ESTs.fa --format fasta
 
 

Other options

  Provide ONE of:
 
   --query query string OR
   --queryfile profile file with query OR
   --gi --gifile file with list of GIs to download
 
  Database type:
 
  --db database (nucest, protein, nucleotide)
 
  -f --format sequence file output format
  -v --verbose debugging output
 
 

Query options

  --maxids maximum number of IDs to retrieve in a set
  --reldate 
  --maxdate maxdate for a record
  --mindate minimum date for record
  --datetype edat or mdat (entered or modified)
 
 

AUTHOR Jason Stajich

Jason Stajich, jason-AT-bioperl.org