g_rama_d

Langue: en

Autres versions - même langue

Version: 265495 (debian - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME

g_rama - computes Ramachandran plots

SYNOPSIS

g_rama -f traj.xtc -s topol.tpr -o rama.xvg -[no]h -nice int -b time -e time -dt time -[no]w -[no]xvgr

DESCRIPTION

g_rama selects the Phi/Psi dihedral combinations from your topology file and computes these as a function of time. Using simple Unix tools such as grep you can select out specific residues.

FILES

-f traj.xtc Input
 Generic trajectory: xtc trr trj gro g96 pdb 

-s topol.tpr Input
 Generic run input: tpr tpb tpa xml 

-o rama.xvg Output
 xvgr/xmgr file 

OTHER OPTIONS

-[no]h no
 Print help info and quit

-nice int 19
 Set the nicelevel

-b time 0
 First frame (ps) to read from trajectory

-e time 0
 Last frame (ps) to read from trajectory

-dt time 0
 Only use frame when t MOD dt = first time (ps)

-[no]w no
 View output xvg, xpm, eps and pdb files

-[no]xvgr yes
 Add specific codes (legends etc.) in the output xvg files for the xmgrace program

SEE ALSO

gromacs(7)

More information about the GROMACS suite is available in /usr/share/doc/gromacs or at <http://www.gromacs.org/>.