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i.atcorr.1grass

NAME

i.atcorr - Performs atmospheric correction using the 6S algorithm.
6S - Second Simulation of Satellite Signal in the Solar Spectrum.

KEYWORDS

imagery, atmospheric correction

SYNOPSIS

i.atcorr
i.atcorr help
i.atcorr [-frabo] iimg=name [iscl=range] [ialt=name] [ivis=name] icnd=name oimg=name [oscl=range] [--overwrite] [--verbose] [--quiet]

Flags:

-f

Output raster is floating point

-r

Input map converted to reflectance (default is radiance)

-a

Input from ETM+ image taken after July 1, 2000

-b

Input from ETM+ image taken before July 1, 2000

-o

Try to increase computation speed when categorized altitude or/and visibility map is used

--overwrite

Allow output files to overwrite existing files

--verbose

Verbose module output

--quiet

Quiet module output

Parameters:

iimg=name

Name of input raster map

iscl=range

Input imagery range [0,255]
Default: 0,255

ialt=name

Input altitude raster map in m (optional)
Default: dem_float

ivis=name

Input visibility raster map in km (optional)

icnd=name

Name of input text file

oimg=name

Name for output raster map

oscl=range

Rescale output raster map [0,255]
Default: 0,255

DESCRIPTION

i.atcorr performs atmospheric correction on the input raster using the 6S algorithm (Second Simulation of Satellite Signal in the Solar Spectrum). A detailed algorithm description is available at the Land Surface Reflectance Science Computing Facility website and Mauro A. Homem Antunes <a href="http://www.ltid.inpe.br/dsr/mauro/6s/download_6s.html">website about his 6s version.

Current region settings are ignored. The region is adjusted to cover the input raster before the atmospheric correction is performed. The previous settings are restored afterwards.

Because using a continuous elevation ialt (input altitude map) or visibility ivis (input visibility map) map makes execution time much longer, it is advised to use categorized maps instead, in conjuction with flag -o. This flag tells i.atcorr to try and speedup calculations. However, this option under certain conditions can make execution time longer.

If flag -r is used, the input data are treated as reflectance. Otherwise, the input data are treated as radiance values and are converted to reflectance at the i.atcorr runtime. The output data are always reflectance.

An example 6s parameters icnd file for i.atcorr:

8 - geometrical conditions=Landsat ETM+
2 19 13.00 -47.410 -20.234 - month day hh.ddd longitude latitude ("hh.ddd" is a decimal hour GMT)
1 - atmospheric mode=tropical
1 - aerosols model=continental
15 - visibility [km] (aerosol model concentration)
-0.600 - mean target elevation above sea level [km] (here 600m asl)
-1000 - sensor height (here, sensor on board a satellite)
64 - 4th band of ETM+ Landsat 7
If the position is not available in longitude-latitude (WGS84), the m.proj conversion module can be used to reproject from a different projection.

REMAINING DOCUMENTATION ISSUES

1. It should be explained under what circumstances the use of categorized maps in conjuction with flag -o can slow down the calculations instead of speeding them up.

6S CODE PARAMETER CHOICES

A. Geometrical conditions:

| Code | Description | Details
| 1 | meteosat observation | enter month,day,decimal hour (universal time-hh.ddd)

                      n. of column,n. of line.(full scale 5000*2500)
| 2 | goes east observation | enter month,day,decimal hour (universal time-hh.ddd)

                      n. of column,n. of line.(full scale 17000*12000)c
| 3 | goes west observation | enter month,day,decimal hour (universal time-hh.ddd)

                      n. of column,n. of line.(full scale 17000*12000)
| 4 | avhrr (PM noaa) | enter month,day,decimal hour (universal time-hh.ddd)

                      n. of column(1-2048),xlonan,hna

                      give long.(xlonan) and overpass hour (hna) at

                      the ascendant node at equator
| 5 | avhrr (AM noaa) | enter month,day,decimal hour (universal time-hh.ddd)

                      n. of column(1-2048),xlonan,hna

                      give long.(xlonan) and overpass hour (hna) at

                      the ascendant node at equator
| 6 | hrv (spot) | enter month,day,hh.ddd,long.,lat. *
| 7 | tm (landsat) | enter month,day,hh.ddd,long.,lat. *
| 8 | etm+ (landsat7) | enter month,day,hh.ddd,long.,lat. *
| 9 | liss (IRS 1C) | enter month,day,hh.ddd,long.,lat. *
| 10 | aster | enter month,day,hh.ddd,long.,lat. * * NOTE: for HRV, TM, ETM+, LISS and ASTER experiments, longitude and latitude are the coordinates of the scene center. Latitude must be >0 for northern hemisphere and 0 for eastern hemisphere and <0 for western.

B. Atmospheric model

| Code | Meaning
| 0 | no gaseous absorption
| 1 | tropical
| 2 | midlatitude summer
| 3 | midlatitude winter
| 4 | subarctic summer
| 5 | subarctic winter
| 6 | us standard 62
| 7 | Define your own atmospheric model as a set of the following 5 parameters per each measurement:

altitude [km]
pressure [mb]
temperature [k]
h2o density [g/m3]
o3 density [g/m3]
For example: there is one radiosonde measurement for each altitude of 0-25km at a step of 1km, one measurment for each altitude of 25-50km at a step of 5km, and two single measurements for altitudes 70km and 100km. This makes 34 measurments. In that case, there are 34*5 values to input.
| 8 | Define your own atmospheric model providing values of the water vapor and ozone content:

uw [g/cm2]
uo3 [cm-atm]


 The profile is taken from us62.

C. Aerosols model

| Code | Meaning | Details
| 0 | no aerosols |
| 1 | continental model |
| 2 | maritime model |
| 3 | urban model |
| 4 | shettle model for background desert aerosol |
| 5 | biomass burning |
| 6 | stratospheric model |
| 7 | define your own model | Enter the volumic percentage of each component:

c(1) = volumic % of dust-like
c(2) = volumic % of water-soluble
c(3) = volumic % of oceanic
c(4) = volumic % of soot

All values between 0 and 1.
| 8 | define your own model | Size distribution function: Multimodal Log Normal (up to 4 modes).
| 9 | define your own model | Size distribution function: Modified gamma.
| 10 | define your own model | Size distribution function: Junge Power-Law.
| 11 | define your own model | Sun-photometer measurements, 50 values max, entered as:

r and d V / d (logr)

where r is the radius [micron], V is the volume, d V / d (logr) [cm3/cm2/micron].

Followed by:

nr and ni for each wavelength

where nr and ni are respectively the real and imaginary part of the refractive index.

D. Aerosol concentration model (visibility)

If you have an estimate of the meteorological parameter visibility v, enter directly the value of v [km] (the aerosol optical depth will be computed from a standard aerosol profile).

If you have an estimate of aerosol optical depth, enter v=0 for the visibility and enter the aerosol optical depth at 550nm (iaer means 'i' for input and 'aer' for aerosol).

NOTE: if iaer=0, enter v=-1.

E. Target altitude (xps), sensor platform (xpp)

Target altitude (xps, in negative [km]): xps <=0 means the target is at the sea level.
otherwise xps expresses the altitude of the target (e.g., mean elevation) in [km], given as negative value

Sensor platform (xpp, in negative [km] or -1000):
xpp=-1000 means that the sensor is on board a satellite.
xpp=0 means that the sensor is at the ground level.
-100<xpp<0 defines the altitude of the sensor expressed in [km]; this altitude is given relative to the target altitude as negative value.

For aircraft simulations only (xpp is neither equal to 0 nor equal to -1000): puw,po3 (water vapor content,ozone content between the aircraft and the surface)
taerp (the aerosol optical thickness at 550nm between the aircraft and the surface)

If these data are not available, enter negative values for all of them. puw,po3 will then be interpolated from the us62 standard profile according to the values at the ground level. taerp will be computed according to a 2km exponential profile for aerosol.

F. Sensor band

There are two possibilities: either define your own spectral conditions (codes -2, -1, 0, or 1) or choose a code indicating the band of one of the pre-defined satellites.

Define your own spectral conditions:

| Code | Meaning
| -2 | Enter wlinf, wlsup.
The filter function will be equal to 1 over the whole band (as iwave=0) but step by step output will be printed.
| -1 | Enter wl (monochr. cond, gaseous absorption is included).
| 0 | Enter wlinf, wlsup.
The filter function will be equal to 1over the whole band.
| 1 | Enter wlinf, wlsup and user's filter function s(lambda) by step of 0.0025 micrometer.

Pre-defined satellite bands:

       | Code  | Meaning

       | 2     | meteosat vis band (0.350-1.110)

       | 3     | goes east band vis (0.490-0.900)

       | 4     | goes west band vis (0.490-0.900)

       | 5     | avhrr (noaa6) band 1 (0.550-0.750)

       | 6     | avhrr (noaa6) band 2 (0.690-1.120)

       | 7     | avhrr (noaa7) band 1 (0.500-0.800)

       | 8     | avhrr (noaa7) band 2 (0.640-1.170)

       | 9     | avhrr (noaa8) band 1 (0.540-1.010)

       | 10    | avhrr (noaa8) band 2 (0.680-1.120)

       | 11    | avhrr (noaa9) band 1 (0.530-0.810)

       | 12    | avhrr (noaa9) band 1 (0.680-1.170)

       | 13    | avhrr (noaa10) band 1 (0.530-0.780)

       | 14    | avhrr (noaa10) band 2 (0.600-1.190)

       | 15    | avhrr (noaa11) band 1 (0.540-0.820)

       | 16    | avhrr (noaa11) band 2 (0.600-1.120)

       | 17    | hrv1 (spot1) band 1 (0.470-0.650)

       | 18    | hrv1 (spot1) band 2 (0.600-0.720)

       | 19    | hrv1 (spot1) band 3 (0.730-0.930)

       | 20    | hrv1 (spot1) band pan (0.470-0.790)

       | 21    | hrv2 (spot1) band 1 (0.470-0.650)

       | 22    | hrv2 (spot1) band 2 (0.590-0.730)

       | 23    | hrv2 (spot1) band 3 (0.740-0.940)

       | 24    | hrv2 (spot1) band pan (0.470-0.790)

       | 25    | tm (landsat5) band 1 (0.430-0.560)

       | 26    | tm (landsat5) band 2 (0.500-0.650)

       | 27    | tm (landsat5) band 3 (0.580-0.740)

       | 28    | tm (landsat5) band 4 (0.730-0.950)

       | 29    | tm (landsat5) band 5 (1.5025-1.890)

       | 30    | tm (landsat5) band 7 (1.950-2.410)

       | 31    | mss (landsat5) band 1 (0.475-0.640)

       | 32    | mss (landsat5) band 2 (0.580-0.750)

       | 33    | mss (landsat5) band 3 (0.655-0.855)

       | 34    | mss (landsat5) band 4 (0.785-1.100)

       | 35    | MAS (ER2) band 1 (0.5025-0.5875)

       | 36    | MAS (ER2) band 2 (0.6075-0.7000)

       | 37    | MAS (ER2) band 3 (0.8300-0.9125)

       | 38    | MAS (ER2) band 4 (0.9000-0.9975)

       | 39    | MAS (ER2) band 5 (1.8200-1.9575)

       | 40    | MAS (ER2) band 6 (2.0950-2.1925)

       | 41    | MAS (ER2) band 7 (3.5800-3.8700)

       | 42    | MODIS band 1 (0.6100-0.6850)

       | 43    | MODIS band 2 (0.8200-0.9025)

       | 44    | MODIS band 3 (0.4500-0.4825)

       | 45    | MODIS band 4 (0.5400-0.5700)

       | 46    | MODIS band 5 (1.2150-1.2700)

       | 47    | MODIS band 6 (1.6000-1.6650)

       | 48    | MODIS band 7 (2.0575-2.1825)

       | 49    | avhrr (noaa12) band 1 (0.500-1.000)

       | 50    | avhrr (noaa12) band 2 (0.650-1.120)

       | 51    | avhrr (noaa14) band 1 (0.500-1.110)

       | 52    | avhrr (noaa14) band 2 (0.680-1.100)

       | 53    | POLDER band 1 (0.4125-0.4775)

       | 54    | POLDER band 2 (non polar) (0.4100-0.5225)

       | 55    | POLDER band 3 (non polar) (0.5325-0.5950)

       | 56    | POLDER band 4 P1 (0.6300-0.7025)

       | 57    | POLDER band 5 (non polar) (0.7450-0.7800)

       | 58    | POLDER band 6 (non polar) (0.7000-0.8300)

       | 59    | POLDER band 7 P1 (0.8100-0.9200)

       | 60    | POLDER band 8 (non polar) (0.8650-0.9400)

       | 61    | etm+ (landsat7) band 1 (0.435-0.520)

       | 62    | etm+ (landsat7) band 2 (0.506-0.621)

       | 63    | etm+ (landsat7) band 3 (0.622-0.702)

       | 64    | etm+ (landsat7) band 4 (0.751-0.911)

       | 65    | etm+ (landsat7) band 5 (1.512-1.792)

       | 66    | etm+ (landsat7) band 7 (2.020-2.380)

       | 67    | etm+ (landsat7) band 8 (0.504-0.909)

       | 68    | liss (IRC 1C) band 2 (0.502-0.620)

       | 69    | liss (IRC 1C) band 3 (0.612-0.700)

       | 70    | liss (IRC 1C) band 4 (0.752-0.880)

       | 71    | liss (IRC 1C) band 5 (1.452-1.760)

       | 72    | aster band 1 (0.480-0.645)

       | 73    | aster band 2 (0.588-0.733)

       | 74    | aster band 3N (0.723-0.913)

       | 75    | aster band 4 (1.530-1.750)

       | 76    | aster band 5 (2.103-2.285)

       | 77    | aster band 6 (2.105-2.298)

       | 78    | aster band 7 (2.200-2.393)

       | 79    | aster band 8 (2.248-2.475)

       | 80    | aster band 9 (2.295-2.538)

EXAMPLES

North Carolina sample dataset: Atmospheric correction of a LANDSAT-7 channel:
g.region rast=lsat7_2002_40 -p

# check metadata for sun position (use to verify overpass time with i.atcorr output):
r.info lsat7_2002_40

# using an integer DEM greatly accelerates the i.atcorr computations
r.mapcalc "elev_int = round(elevation)"

# find mean elevation (target above sea level, used as initialization value in control file)
r.univar elev_int

# check satellite overpass time with sun position reported in metadata
# here: SUN_AZIMUTH = 120.8810347, SUN_ELEVATION = 64.7730999
r.sunmask -s elev=elevation out=dummy year=2002 month=5 day=24 hour=11 min=40 sec=0 timezone=-4
# .. reports: sun azimuth: 120.555206, sun angle above horz.(refraction corrected): 65.028458

# create control file 'icnd.txt' for channel 4 (NIR), based on metadata
# 11:40 local time is 15.66 decimal hour GMT(decimal minutes: 40 * 100 / 60):
echo "8 - geometrical conditions=Landsat ETM+
5 24 15.66 -78.691 35.749 - month day hh.ddd longitude latitude ("hh.ddd" is a decimal hour GMT)
2 - atmospheric mode=midlatitude summer
1 - aerosols model=continental
50 - visibility [km] (aerosol model concentration)
-0.110 - mean target elevation above sea level [km]
-1000 - sensor on board a satellite
64 - 4th band of ETM+ Landsat 7" > icnd_lsat4.txt

# run atmospheric correction (-r for reflectance input map; -a for date >July 2000;
# -o to use cache acceleration):
i.atcorr -r -a -o lsat7_2002_40 ialt=elev_int icnd=icnd_lsat4.txt oimg=lsat7_2002_40_atcorr
Note that the altitude value from 'icnd_lsat4.txt' file is read at the beginning to compute the initial transform. It is necessary to give a value which could the the mean value of the elevation model. For the atmospheric correction then the raster elevation values are used from the map.

Note that the process is computationally intensive.
Note also, that i.atcorr reports solar elevation angle above horizon rather than solar zenith angle.

SEE ALSO

The GRASS Wiki page about Atmospheric correction

m.proj

AUTHORS

Original version of the program for GRASS 5:
Christo Zietsman, 13422863(at)sun.ac.za

Code clean-up and port to GRASS 6.3, 15.12.2006:
Yann Chemin, ychemin(at)gmail.com

Documentation clean-up + IRS LISS sensor addition 5/2009:
Markus Neteler, FEM, Italy

ASTER sensor addition 7/2009:
Michael Perdue, Canada

REFERENCES

 Vermote, E.F., Tanre, D., Deuze, J.L., Herman, M., and Morcrette, J.J., 1997, Second simulation of the satellite signal in the solar spectrum, 6S: An overview., IEEE Trans. Geosc. and Remote Sens. 35(3):675-686.

 PDF3)

Mauro A. Homem Antunes website about his 6s version

Last changed: $Date: 2010-02-11 01:05:43 +0100 (gio, 11 feb 2010) $

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