srf2fasta

Langue: en

Version: 335363 (ubuntu - 24/10/10)

Section: 1 (Commandes utilisateur)

NAME

srf2fasta - Converts SRF files to fasta format

SYNOPSIS

srf2fasta [-C] srf_archive

DESCRIPTION

srf2fasta extracts sequences from an SRF archive and writes them in fasta format to stdout.

OPTIONS

-C
Masks out sequences tagged as bad quality.

EXAMPLES

To extract only the good quality sequences from runX.srf into runX.fasta.

     srf2fasta -C runX.srf > runX.fasta
 

AUTHOR

James Bonfield, Wellcome Trust Sanger Institute