Ace::Graphics::Glyph::transcript.3pm

Langue: en

Autres versions - même langue

Version: 2001-05-22 (debian - 07/07/09)

Section: 3 (Bibliothèques de fonctions)

NAME

Ace::Graphics::Glyph::transcript - The "gene" glyph

SYNOPSIS

   See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.
 
 

DESCRIPTION

This glyph draws a series of filled rectangles connected by up-angled connectors or ``hats''. The rectangles indicate exons; the hats are introns. The direction of transcription is indicated by a small arrow at the end of the glyph, rightward for the + strand.

The feature must respond to the exons() and optionally introns() methods, or it will default to the generic display. Implied introns (not returned by the introns() method) are drawn in a contrasting color to explicit introns.

OPTIONS

In addition to the common options, the following glyph-specific option is recognized:
   Option                Description                    Default
   ------                -----------                    -------
 
   -implied_intron_color The color to use for gaps      gray
                         not returned by the introns()
                         method.
 
   -draw_arrow           Whether to draw arrowhead      true
                         indicating direction of
                         transcription.
 
 

BUGS

Please report them.

SEE ALSO

Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow, Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments, Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,

AUTHOR

Lincoln Stein <lstein@cshl.org>.

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.