Bio::DB::GFF::Aggregator::ucsc_refgene.3pm

Langue: en

Version: 2009-02-27 (fedora - 06/07/09)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::DB::GFF::Aggregator::ucsc_refgene -- UCSC refGene aggregator

SYNOPSIS

   use Bio::DB::GFF;
 
   # Open the sequence database
   my $db      = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
                                    -dsn     => 'dbi:mysql:elegans42',
                                    -aggregator => ['transcript','clone'],
                                  );
 
  -------------------------------------------------
  Aggregator method: refgene
  Main method:       transcript
  Sub methods:       refGene
  -------------------------------------------------
 
 

DESCRIPTION

Bio::DB::GFF::Aggregator::transcript

method

  Title   : method
  Usage   : $aggregator->method
  Function: return the method for the composite object
  Returns : the string "refgene"
  Args    : none
  Status  : Public
 
 

part_names

  Title   : part_names
  Usage   : $aggregator->part_names
  Function: return the methods for the sub-parts
  Returns : empty list
  Args    : none
  Status  : Public
 
 

main_name

  Title   : main_name
  Usage   : $aggregator->main_name
  Function: return the method for the main component
  Returns : the string "transcript:refGene"
  Args    : none
  Status  : Public
 
 

BUGS

None reported.

SEE ALSO

Bio::DB::GFF, Bio::DB::GFF::Aggregator

AUTHOR

Allen Day <allenday@ucla.edu>.

Copyright (c) 2002 Allen Day, University of California, Los Angeles.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.