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Bio::LiveSeq::Exon.3pm
Langue: en
Version: 2009-03-10 (debian - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::LiveSeq::Exon - Range abstract class for LiveSeqSYNOPSIS
# documentation needed
DESCRIPTION
Class for EXON objects. They consist of a beginlabel, an endlabel (both referring to a LiveSeq DNA object) and a strand. The strand could be 1 (forward strand, default), -1 (reverse strand).AUTHOR - Joseph A.L. Insana
Email: Insana@ebi.ac.uk, jinsana@gmx.netAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _new
Title : new Usage : $exon1 = Bio::LiveSeq::Exon-> new(-seq => $objref, -start => $startlabel, -end => $endlabel, -strand => 1); Function: generates a new Bio::LiveSeq::Exon Returns : reference to a new object of class Exon Errorcode -1 Args : two labels and an integer
get_Transcript
Title : get_Transcript Usage : $transcript = $obj->get_Transcript() Function: retrieves the reference to the object of class Transcript (if any) attached to a LiveSeq object Returns : object reference Args : none Note : only Exons that compose a Transcript (i.e. those created out of a CDS Entry-Feature) will have an attached Transcript
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre