Bio::LiveSeq::Exon.3pm

Langue: en

Version: 2009-03-10 (debian - 07/07/09)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::LiveSeq::Exon - Range abstract class for LiveSeq

SYNOPSIS

   # documentation needed
 
 

DESCRIPTION

Class for EXON objects. They consist of a beginlabel, an endlabel (both referring to a LiveSeq DNA object) and a strand. The strand could be 1 (forward strand, default), -1 (reverse strand).

AUTHOR - Joseph A.L. Insana

Email: Insana@ebi.ac.uk, jinsana@gmx.net

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

   Title   : new
   Usage   : $exon1 = Bio::LiveSeq::Exon-> new(-seq => $objref,
                                               -start => $startlabel,
                                               -end => $endlabel, -strand => 1);
 
   Function: generates a new Bio::LiveSeq::Exon
   Returns : reference to a new object of class Exon
   Errorcode -1
   Args    : two labels and an integer
 
 

get_Transcript

   Title   : get_Transcript
   Usage   : $transcript = $obj->get_Transcript()
   Function: retrieves the reference to the object of class Transcript (if any)
             attached to a LiveSeq object
   Returns : object reference
   Args    : none
   Note    : only Exons that compose a Transcript (i.e. those created out of
             a CDS Entry-Feature) will have an attached Transcript