Bio::LiveSeq::Range.3pm

Langue: en

Version: 2009-03-10 (debian - 07/07/09)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::LiveSeq::Range - Range abstract class for LiveSeq

SYNOPSIS

   # documentation needed
 
 

DESCRIPTION

This is used as parent for exon and intron classes.

AUTHOR - Joseph A.L. Insana

Email: Insana@ebi.ac.uk, jinsana@gmx.net

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

   Title   : new
   Usage   : $range1 = Bio::LiveSeq::Range->new(-seq => $obj_ref,
                                                -start => $beginlabel,
                                                -end => $endlabel, -strand => 1);
 
   Function: generates a new Bio::LiveSeq::Range
   Returns : reference to a new object of class Range
   Errorcode -1
   Args    : two labels, an obj_ref and an integer
             strand 1=forward strand, strand -1=reverse strand
             if strand not specified, it defaults to 1
             the -seq argument must point to the underlying DNA LiveSeq object
 
 

valid

   Title   : valid
   Usage   : $boolean = $obj->valid($label)
   Function: tests if a label exists AND is part of the object
   Returns : boolean
   Args    : label