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Bio::Seq::SeqFastaSpeedFactory.3pm

NAME

Bio::Seq::SeqFastaSpeedFactory - Instantiates a new Bio::PrimarySeqI (or derived class) through a factory

SYNOPSIS

     use Bio::Seq::SeqFastaSpeedFactory;
     my $factory = Bio::Seq::SeqFastaSpeedFactory->new();
     my $seq = $factory->create(-seq => 'WYRAVLC',
                                -id  => 'name');
 
     # If you want the factory to create Bio::Seq objects instead
     # of the default Bio::PrimarySeq objects, use the -type parameter:
 
     my $factory = Bio::Seq::SeqFastaSpeedFactory->new(-type => 'Bio::Seq');
 
 

DESCRIPTION

This object will build Bio::Seq objects generically.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

   http://bugzilla.open-bio.org/
 
 

AUTHOR - Jason Stajich

Email jason@bioperl.org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

  Title   : new
  Usage   : my $obj = Bio::Seq::SeqFastaSpeedFactory->new();
  Function: Builds a new Bio::Seq::SeqFastaSpeedFactory object 
  Returns : Bio::Seq::SeqFastaSpeedFactory
  Args    : -type => string, name of a PrimarySeqI derived class
                     This is optional. Default=Bio::PrimarySeq.
 
 

create

  Title   : create
  Usage   : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name');
  Function: Instantiates a new Bio::Seq object, correctly built but very
            fast, knowing stuff about Bio::PrimarySeq and Bio::Seq
  Returns : Bio::Seq
 
  Args    : initialization parameters specific to the type of sequence
            object we want.  Typically 
            -seq        => $str,
            -id         => $name