Bio::SeqIO::lasergene.3pm

Langue: en

Version: 2010-05-19 (ubuntu - 24/10/10)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::SeqIO::lasergene - Lasergene sequence file input/output stream

SYNOPSIS

Do not use this module directly. Use it via the Bio::SeqIO class.

DESCRIPTION

This object can product Bio::Seq::RichSeq objects from Lasergene sequence files.

IT DOES NOT PARSE ANY ATTIBUTE VALUE PAIRS IN THE HEADER OF THE LASERGENE FORMATTED FILE.

IT DOES NOT WRITE THESE FILES EITHER.

REFERENCES

   https://www.dnastar.com/products/lasergene.php
 
 

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
   http://bugzilla.bioperl.org
 
 

AUTHORS

   Torsten Seemann - torsten.seemann AT infotech.monash.edu.au
   Malcolm Cook  - mec AT stowers-institute.org
 
 

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

next_seq

  Title   : next_seq
  Usage   : $seq = $stream->next_seq()
  Function: returns the next sequence in the stream
  Returns : Bio::Seq object
  Args    : none
 
 

write_seq (NOT IMPLEMENTED)

  Title   : write_seq
  Usage   : $stream->write_seq($seq)
  Function: writes the $seq object into the stream
  Returns : 1 for success and 0 for error
  Args    : Array of Bio::PrimarySeqI objects