Bio::Structure::Chain.3pm

Langue: en

Version: 2008-01-11 (mandriva - 01/05/08)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::Structure::Chain - Bioperl structure Object, describes a chain

SYNOPSIS

   #add synopsis here
 
 

DESCRIPTION

This object stores a Bio::Structure::Chain

FEEDBACK


Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

   http://bugzilla.open-bio.org/
 
 

AUTHOR - Kris Boulez

Email kris.boulez@algonomics.com

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new()

  Title   : new()
  Usage   : $struc = Bio::Structure::Chain->new( 
                            -id  => 'human_id',
                            -accession_number => 'AL000012',
                                            );
 
 
  Function: Returns a new Bio::Structure::Chain object from basic 
                 constructors. Usually called from Bio::Structure::IO.
  Returns : a new Bio::Structure::Chain object
 
 

residue()

  Title   : residue 
  Usage   : 
  Function:  nothing useful until I get symbolic references to do what I want
  Returns : 
  Args    :
 
 

add_residue()

  Title   : add_residue
  Usage   : 
  Function: nothing useful until I get symbolic references to do what I want
  Returns : 
  Args    :
 
 

model()

  Title   : model
  Usage   : 
  Function: nothing useful until I get symbolic references to do what I want
  Returns : 
  Args    :
 
 

id()

  Title   : id
  Usage   : $chain->id("chain B")
  Function: Gets/sets the ID for this chain
  Returns : the ID
  Args    : the ID
 
 

_remove_residues()

  Title   : _remove_residues
  Usage   : 
  Function: 
  Returns : 
  Args    :
 
 

_remove_model()

  Title   : _remove_model
  Usage   : 
  Function: Removes the Model this Chain is atttached to.
  Returns : 
  Args    :
 
 

_grandparent()

  Title   : _grandparent
  Usage   : 
  Function: get/set a symbolic reference to our grandparent
  Returns : 
  Args    :