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Bio::Tools::Blat.3pm
Langue: en
Version: 2009-02-27 (fedora - 05/07/09)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::Tools::Blat - parser for Blat programSYNOPSIS
use Bio::Tools::Blat; my $blat_parser = Bio::Tools::Blat->new(-fh =>$filehandle ); while( my $blat_feat = $blat_parser->next_result ) { push @blat_feat, $blat_feat; }
DESCRIPTION
Parser for Blat program
FEEDBACK
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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted the web: http://bugzilla.open-bio.org/
AUTHOR - Balamurugan Kumarasamy
Email: bala@tll.org.sg
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new Usage : my $obj = Bio::Tools::Blat->new(-fh=>$filehandle); Function: Builds a new Bio::Tools::Blat object Returns : Bio::Tools::Blat Args : -filename -fh (filehandle)
next_result
Title : next_result Usage : my $feat = $blat_parser->next_result Function: Get the next result set from parser data Returns : L<Bio::SeqFeature::Generic> Args : none
create_feature
Title : create_feature Usage : my $feat=$blat_parser->create_feature($feature,$seqname) Function: creates a SeqFeature Generic object Returns : L<Bio::SeqFeature::Generic> Args :
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