Bio::Tools::Phylo::Phylip::ProtDist.3pm

Langue: en

Version: 2010-05-19 (ubuntu - 24/10/10)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::Tools::Phylo::Phylip::ProtDist - parser for ProtDist output

SYNOPSIS

     use Bio::Tools::Phylo::Phylip::ProtDist;
     my $parser = Bio::Tools::Phylo::Phylip::ProtDist->new(-file => 'outfile');
     while( my $result = $parser->next_matrix) {
       # do something with it
     }
 
 

DESCRIPTION

A parser for ProtDist output into a Bio::Matrix::PhylipDist object. See also Bio::Matrix::IO::phylip this module may go away.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
   http://bugzilla.open-bio.org/
 
 

AUTHOR - Shawn Hoon

Email shawnh@fugu-sg.org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

  Title   : new
  Usage   : my $obj = Bio::Tools::Phylo::Phylip::ProtDist->new();
  Function: Builds a new Bio::Tools::Phylo::Phylip::ProtDist object 
  Returns : Bio::Tools::ProtDist
  Args    : -fh/-file => $val, # for initing input, see Bio::Root::IO
            -program  => 'programname' # name of the program
 
 

next_matrix

  Title   : next_matrix
  Usage   : my $matrix = $parser->next_matrix
  Function: Get the next result set from parser data
  Returns : L<Bio::Matrix::PhylipDist>
  Args    : none