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Bio::Tools::PrositeScan.3pm

NAME

Bio::Tools::PrositeScan - Parser for ps_scan result

SYNOPSIS

   use Bio::Tools::PrositeScan;
 
   my $factory = Bio::Tools::PrositeScan->new(
       -file => 'out.PrositeScan'
   );
 
   while(my $match = $factory->next_prediction){
       #  $match is of Bio::SeqFeature::FeaturePair
       my $q_id = $fatch->feature1->seq_id;
       my $h_id = $fatch->feature2->seq_id;
   }
 
 

DESCRIPTION

This is the parser of the output of ps_scan program. It takes either a file handler or a file name, and returns a Bio::SeqFeature::FeaturePair object.

AUTHOR

Juguang Xiao, juguang@tll.org.sg

new

   Title   : new
   Usage   : Bio::Tools::PrositeScan->new(-file => 'out.PrositeScan');
             Bio::Tools::PrositeScan->new(-fh => \*FH);
   Returns : L<Bio::Tools::PrositeScan>
 
 

next_prediction

   Title   : new
   Usage   : 
       while($result = $factory->next_prediction){
           ;
       }
 
   Returns : a Bio::SeqFeature::FeaturePair object