Langue: en

Version: 2010-05-19 (ubuntu - 24/10/10)

Section: 3 (Bibliothèques de fonctions)


Bio::Tools::RepeatMasker - a parser for RepeatMasker output


     use Bio::Tools::RepeatMasker;
     my $parser = Bio::Tools::RepeatMasker->new(-file => 'seq.fa.out');
     while( my $result = $parser->next_result ) {
       # get some value


A parser for RepeatMasker output


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AUTHOR - Shawn Hoon



The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _


  Title   : new
  Usage   : my $obj = Bio::Tools::RepeatMasker->new();
  Function: Builds a new Bio::Tools::RepeatMasker object
  Returns : Bio::Tools::RepeatMasker
  Args    : -fh/-file => $val, for initing input, see Bio::Root::IO


  Title   : next_result
  Usage   : my $r = $rpt_masker->next_result
  Function: Get the next result set from parser data
  Returns : Bio::SeqFeature::FeaturePair
            Feature1 is the Query coordinates and Feature2 is the Hit
  Args    : none