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Bio::Tools::RepeatMasker.3pm
Langue: en
Version: 2008-01-11 (mandriva - 01/05/08)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::Tools::RepeatMasker - a parser for RepeatMasker outputSYNOPSIS
use Bio::Tools::RepeatMasker; my $parser = new Bio::Tools::RepeatMasker(-file => 'seq.fa.out'); while( my $result = $parser->next_result ) { # get some value }
DESCRIPTION
A parser for RepeatMasker outputFEEDBACK
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AUTHOR - Shawn Hoon
Email shawnh@fugu-sg.orgAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _new
Title : new Usage : my $obj = new Bio::Tools::RepeatMasker(); Function: Builds a new Bio::Tools::RepeatMasker object Returns : Bio::Tools::RepeatMasker Args : -fh/-file => $val, for initing input, see Bio::Root::IO
next_result
Title : next_result Usage : my $r = $rpt_masker->next_result Function: Get the next result set from parser data Returns : Bio::SeqFeature::FeaturePair Feature1 is the Query coordinates and Feature2 is the Hit Args : none
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