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Atropos
Langue: en
Version: June 2010 (ubuntu - 24/10/10)
Section: 1 (Commandes utilisateur)
Sommaire
NAME
Atropos - part of ANTS registration suiteDESCRIPTION
COMMAND:
- ./Atropos
- Atropos:
- A priori classification with registration initialized template assistance.
OPTIONS:
- -i, --initialization:
- Option 1:
- Random[numberOfClasses]
- Option 2:
- Kmeans[numberOfClasses]
- Option 3:
- Otsu[numberOfClasses]
- Option 4:
- PriorProbabilityImages[numberOfClasses,fileSeriesFormat(index=1 to numberOfClasses) or vectorImage,priorWeighting]
- Option 5:
- PriorLabelImage[numberOfClasses,labelImage,priorWeighting]
- -a, --intensity-image:
- [intensityImage,<adaptiveSmoothingWeight>] -- adaptive smoothing only applies to initialization with prior image(s)
- -x, --mask-image:
- maskImage
- -c, --convergence:
- [<numberOfIterations>,<convergenceThreshold>]
- -k, --likelihood-model:
- Option 1: Gaussian Option 2: ManifoldParzenWindows[<pointSetSigma=1.0>,<evaluationKNeighborhood=50>,<CovarianceKNeighborhood=0>,<kernelSigma=0>] Option 3: HistogramParzenWindows[<Sigma=1.0>,<numberOfBins=32>]
- -m, --mrf:
- [<smoothingFactor>,<radius>]
- -o, --output:
- [classifiedImage,<posteriorProbabilityImageFileNameFormat>]
- -u, --minimize-memory-usage:
- minimize-memory-usage=1/(0) <VALUES>: 0
- -b, --bspline:
- [<numberOfLevels>,<initialMeshResolution>,<splineOrder>] -- only applies to initialization with prior image(s) and non-zero adaptive smoothing parameter.
- -e, --use-euclidean-distance:
- use euclidean or geodesic distance for prior label distance maps = 1/(0) -- only applies to initialization with a prior label image. <VALUES>: 0
- -w, --winsorize-outliers:
- Option 1: BoxPlot[<lowerPercentile=0.25>,<upperPercentile=0.75>,<whiskerLength=1.5>] Option 2: GrubbsRosner[<significanceLevel=0.05>,<winsorizingLevel=0.10>]
- -l, --labels:
- whichLabel[sigma,<boundaryProbability>] -- only applies to initialization with a prior label image.
- -h, --help:
- Print menu. <VALUES>: 1, 0
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre