csv2mipe

Langue: en

Version: 2005-07-20 (debian - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME

csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
  based on MIPE version v1.1
  arguments: * tab-delimited file with PCR-level data
             * tab-delimited file with SNP-level data
             * tab-delimited file with assay-level data
   Columns in file with PCR-level data:
     pcr_id
     pcr_modified (might be multiple, divided by semi-colon ";")
     pcr_project (might be multiple, divided by semi-colon ";")
     pcr_researcher (might be multiple, divided by semi-colon ";")
     pcr_species
     source_type
     source_id
     design_seq
     primer1_oligo
     primer1_seq
     primer1_tm
     primer2_oligo
     primer2_seq
     primer2_tm
     design_remark (might be multiple, divided by semi-colon ";")
     use_seq
     use_revcomp
     use_remark (might be multiple, divided by semi-colon ";")
     pcr_remark (might be multiple, divided by semi-colon ";")
 
   Columns in file with SNP-level data:
     pcr_id
     snp_id
     snp_pos
     snp_amb
     snp_remark (might be multiple, divided by semi-colon ";")
 
   Columns in file with assay-level data:
     pcr_id
     snp_id
     assay_id
     assay_type
     assay_enzyme
     assay_oligo
     assay_specific
     assay_tail
     assay_strand
     assay_remark (might be multiple, divided by semi-colon ";")
 
 

SYNOPSIS

csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>

ADDITIONAL INFO

See http://mipe.sourceforge.net

AUTHOR

Jan Aerts (jan.aerts@bbsrc.ac.uk)