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nps2gps

NAME

nps2gps - convert nucleotide-protein sets to ASN.1 genomic product sets

SYNOPSIS

nps2gps [-] [-F] [-L] [-P] [-R] [-f str] [-i filename] [-o filename] [-p path] [-r path] [-x str]

DESCRIPTION

nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it outputs as text ASN.1.

OPTIONS

A summary of options is included below.

-

Print usage message

-F

Map by Feature ID

-L

Lock components in advance

-P

mRNA ID from Protein

-R

Enable Remote fetching from ID

-f str

Substring filter

-i filename

Single input file (default = stdin)

-o filename

Single output file (default = stdout)

-p path

Path to files for batch conversion

-r path

Path for results of batch conversion

-x str

File selection suffix for batch conversion (default = .ent)

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1).