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Bio::Annotation::Target.3pm
Langue: en
Version: 2008-06-24 (ubuntu - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
Sommaire
NAME
Bio::Annotation::Target - Provides an object which represents a target (ie, a similarity hit) from one object to something in another databaseSYNOPSIS
$target1 = new Bio::Annotation::Target(-target_id => 'F321966.1', -start => 1, -end => 200, -strand => 1, # or -1 ); # or $target2 = new Bio::Annotation::Target(); $target2->target_id('Q75IM5'); $target2->start(7); # ... etc ... # Target is-a Bio::AnnotationI object, can be added to annotation # collections, e.g. the one on features or seqs $feat->annotation->add_Annotation('Target', $target2);
DESCRIPTION
Provides an object which represents a target (ie, a similarity hit) from one object to something in another database without prescribing what is in the other databaseAUTHOR - Scott Cain
Scott Cain - cain@cshl.orgAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _AnnotationI implementing functions
as_text
Title : as_text Usage : Function: Example : Returns : Args :
tagname
Title : tagname Usage : $obj->tagname($newval) Function: Get/set the tagname for this annotation value. Setting this is optional. If set, it obviates the need to provide a tag to Bio::AnnotationCollectionI when adding this object. When obtaining an AnnotationI object from the collection, the collection will set the value to the tag under which it was stored unless the object has a tag stored already. Example : Returns : value of tagname (a scalar) Args : new value (a scalar, optional)
Specific accessors for Targets
target_id
- Usage
-
$obj->target_id() #get existing value $obj->target_id($newval) #set new value
- Function
- Returns
- value of target_id (a scalar)
- Arguments
- new value of target_id (to set)
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre