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Bio::DB::EUtilities::egquery.3pm

NAME

Bio::DB::EUtilities::egquery - counts for a global query of Entrez databases

SYNOPSIS

     my $egquery = Bio::DB::EUtilities->new(
                                      -eutil    => 'egquery',
                                      -term     => 'dihydroorotase'
                                       );
 
     print $egquery->get_response->content;
 
 

DESCRIPTION

EGQuery provides Entrez database counts in XML for a single search using NCBI's Global Query. No further parsing of the XML data is processed at this time.

NCBI EGQuery Parameters

The following are a general list of parameters that can be used to take advantage of EGQuery. Up-to-date help for EGQuery is available at this URL (the information below is a summary of the options found there):

   http://eutils.ncbi.nlm.nih.gov/entrez/query/static/egquery_help.html
 
 

"term"

Search term or phrase with or without Boolean operators. This can use search field descriptions and tags (Note: these may be database specific and are better used with ESearch.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

   bioperl-l@lists.open-bio.org               - General discussion
   http://www.bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web.

   http://bugzilla.open-bio.org/
 
 

AUTHOR

Email cjfields at uiuc dot edu

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

parse_response

  Title   : parse_response
  Usage   : $db->_parse_response($content)
  Function: parse out response for cookie
  Returns : empty
  Args    : none
  Throws  : 'unparseable output exception'