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Bio::DB::EUtilities::einfo.3pm
Langue: en
Version: 2008-06-24 (ubuntu - 08/07/09)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::DB::EUtilities::einfo - NCBI database informationSYNOPSIS
my $einfo = Bio::DB::EUtilities->new( -eutil => 'einfo', -db => 'pubmed' ); print $einfo->get_response->content;
DESCRIPTION
EInfo queries provide information about NCBI databases. At this time, data is postprocessed for a complete list of Entrez databases (when '-"db"' is not set) or for specific database information, number of entries, date of the last update, or Field or Link information. Using the base URL with no parameters returns a list of all Entrez databases.Parameters
The following are a general list of parameters that can be used to take advantage of EInfo. Up-to-date help for EInfo is available at this URL (the information below is a summary of the options found there):
http://eutils.ncbi.nlm.nih.gov/entrez/query/static/einfo_help.html
- "db"
- Database parameter. This is optional; not setting this will return a list of all the available Entrez databases. If a database is specified, returned XML data will provide the following information : field names, index term counts, last update, and available links for each Entrez database.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@lists.open-bio.org - General discussion http://www.bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web.
http://bugzilla.open-bio.org/
AUTHOR
Email cjfields at uiuc dot eduAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _parse_response
Title : parse_response Usage : $db->_parse_response($content) Function: parse out response for cookie Returns : empty Args : none Throws : 'unparseable output exception'
einfo_dbfield_info
Title : einfo_dbfield_info Usage : @fields = $info->einfo_dbfield_info; Function: gets array of hashes with field information Returns : An array or array reference (based on wantarray) of hashes with information about each field Args : None (this is set using the _set_einfo_data method)
einfo_dblink_info
Title : einfo_dblink_info Usage : @links = $info->einfo_dblink_info; Function: gets array of hashes with link information Returns : An array or array reference (based on wantarray) of hashes with information about each link Args : None (this is set using the _set_einfo_data method)
einfo_db_lastupdate
Title : einfo_db_last_update Usage : $date = $info->einfo_db_lastupdate; Function: returns last date database was updated Returns : String containing date Args : None (this is set using the _set_einfo_data method)
einf_db_desc
Title : einfo_db_desc Usage : $desc = $info->einfo_db_desc; Function: returns database description Returns : String containing descriptions Args : None (this is set using the _set_einfo_data method)
einfo_db_count
Title : einfo_db_count Usage : $count = $info->einfo_db_count; Function: returns database record count Returns : Integer (number of database records) Args : None (this is set using the _set_einfo_data method)
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre