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Bio::DB::GFF::Aggregator::match.3pm
Langue: en
Version: 2008-01-11 (mandriva - 01/05/08)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::DB::GFF::Aggregator::match -- Match aggregatorSYNOPSIS
use Bio::DB::GFF;
# Open the sequence database my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql', -dsn => 'dbi:mysql:elegans42', -aggregator => ['match'], );
------------------------------------------------- Aggregator method: match Main method: match Sub methods: similarity HSP -------------------------------------------------
DESCRIPTION
This aggregator is used for Sequence Ontology-compatible gapped alignments, in which there is a single top-level alignment called ``match'' and a series of subalignments called either ``similarity'' or ``HSP''.Also see the ``alignment'' aggregator.
method
Title : method Usage : $aggregator->method Function: return the method for the composite object Returns : the string "match" Args : none Status : Public
part_names
Title : part_names Usage : $aggregator->part_names Function: return the methods for the sub-parts Returns : the list "similarity", "HSP" Args : none Status : Public
main_name
Title : main_name Usage : $aggregator->main_name Function: return the method for the main component Returns : the string "match" Args : none Status : Public
BUGS
None reported.SEE ALSO
Bio::DB::GFF, Bio::DB::GFF::AggregatorAUTHOR
Lincoln Stein <lstein@cshl.org>.Copyright (c) 2001 Cold Spring Harbor Laboratory.
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre