Bio::DB::SeqVersion.3pm

Langue: en

Version: 2010-05-19 (ubuntu - 24/10/10)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::DB::SeqVersion - front end to querying databases for identifier versions

SYNOPSIS

   use Bio::DB::SeqVersion;
 
   my $query = Bio::DB::SeqVersion->new(-type => 'gi');
 
   my @all_gis = $query->get_all(2);
 
   my $live_gi = $query->get_recent(2);
 
 

DESCRIPTION

The default type is 'gi'.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
   http://bugzilla.open-bio.org/
 
 

AUTHOR - Brian Osborne

Email bosborne at alum.mit.edu

CONTRIBUTORS

Torsten Seemann - torsten.seemann AT infotech.monash.edu.au

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new()

  Usage   : my $obj = Bio::DB::SeqVersion->new();
  Function: Create a Bio::DB::SeqVersion object 
  Returns : An instance of Bio::DB::SeqVersion
  Args    : -type      Identifier namespace, default is 'gi'
 
 

get_recent()

  Usage   :
  Function:
  Example :
  Returns : 
  Args    :
 
 

get_all()

  Usage   :
  Function:
  Example :
  Returns : 
  Args    :
 
 

_load_seqversion_module

  Title   : _load_seqversion_module
  Usage   : Used internally
  Function: Loads up a module at run time on demand
  Example :
  Returns :
  Args    : Name of identifier type
 
 

default_id_type

  Title   : default_id_type
  Usage   : my $type = $self->default_id_type
  Function: Returns default identifier type for this module
  Returns : string
  Args    : none