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Bio::MapIO.3pm
Langue: en
Version: 2008-06-24 (ubuntu - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::MapIO - A Map Factory objectSYNOPSIS
use Bio::MapIO; my $mapio = new Bio::MapIO(-format => "mapmaker", -file => "mapfile.map"); while( my $map = $mapio->next_map ) { # get each map foreach my $marker ( $map->each_element ) { # loop through the markers associated with the map } }
DESCRIPTION
This is the Factory object for reading Maps from a data stream or file.FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted the web:
http://bugzilla.open-bio.org/
AUTHOR - Jason Stajich
Email jason@bioperl.orgAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _new
Title : new Usage : my $obj = new Bio::MapIO(); Function: Builds a new Bio::MapIO object Returns : Bio::MapIO Args :
Bio::Factory::MapFactoryI methods
next_map
Title : next_tree Usage : my $map = $factory->next_map; Function: Get a map from the factory Returns : L<Bio::Map::MapI> Args : none
write_map
Title : write_tree Usage : $factory->write_map($map); Function: Write a map out through the factory Returns : none Args : L<Bio::Map::MapI>
attach_EventHandler
Title : attach_EventHandler Usage : $parser->attatch_EventHandler($handler) Function: Adds an event handler to listen for events Returns : none Args : L<Bio::Event::EventHandlerI>
_eventHandler
Title : _eventHandler Usage : private Function: Get the EventHandler Returns : L<Bio::Event::EventHandlerI> Args : none
_load_format_module
Title : _load_format_module Usage : *INTERNAL MapIO stuff* Function: Loads up (like use) a module at run time on demand Example : Returns : Args :
_guess_format
Title : _guess_format Usage : $obj->_guess_format($filename) Function: Example : Returns : guessed format of filename (lower case) Args :
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