Bio::SeqIO::game::gameHandler.3pm

Langue: en

Version: 2010-05-19 (ubuntu - 24/10/10)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::SeqIO::game::gameHandler -- PerlSAX handler for game-XML

SYNOPSIS

This modules is not used directly

DESCRIPTION

Bio::SeqIO::game::gameHandler is the top-level XML handler invoked by PerlSAX

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists.

Your participation is much appreciated.

   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
   http://bugzilla.open-bio.org/
 
 

AUTHOR - Sheldon McKay

Email mckays@cshl.edu

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

start_document

  Title   : start_document
  Function: begin parsing the document
 
 

end_document

  Title   : end_document
  Function: finish parsing the document
 
 

load

  Title   : load
  Usage   : $seqs = $handler->load
  Function: start parsing
  Returns : a ref to a list of sequence objects
  Args    : an optional flag to supress <computation_analysis> elements (not used yet)
 
 

s_game

  Title   : s_game
  Function: begin parsing game element
 
 

e_game

  Title   : e_game
  Function: process the game element
 
 

e_seq

  Title   : e_seq
  Function: process the sequence element
 
 

e_map_position

  Title   : e_map_position
  Function: process the map_position element
 
 

e_annotation

  Title   : e_annotation
  Function: process the annotation