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Bio::SeqIO::raw.3pm
Langue: en
Version: 2008-01-11 (mandriva - 01/05/08)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::SeqIO::raw - raw sequence file input/output streamSYNOPSIS
Do not use this module directly. Use it via the Bio::SeqIO class.DESCRIPTION
This object can transform Bio::Seq objects to and from raw flat file databases.FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:
http://bugzilla.open-bio.org/
AUTHORS
Ewan Birney E<lt>birney@ebi.ac.ukE<gt> Lincoln Stein E<lt>lstein@cshl.orgE<gt>
CONTRIBUTORS
Jason Stajich E<lt>jason@bioperl.org<gt>
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _next_seq
Title : next_seq Usage : $seq = $stream->next_seq() Function: returns the next sequence in the stream Returns : Bio::Seq object Args :
write_seq
Title : write_seq Usage : $stream->write_seq($seq) Function: writes the $seq object into the stream Returns : 1 for success and 0 for error Args : Array of Bio::PrimarySeqI objects
write_qual
Title : write_qual Usage : $stream->write_qual($seq) Function: writes the $seq object into the stream Returns : 1 for success and 0 for error Args : Bio::Seq::Quality object
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre