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Bio::TreeIO::nhx.3pm
Langue: en
Version: 2010-05-19 (ubuntu - 24/10/10)
Section: 3 (Bibliothèques de fonctions)
Sommaire
NAME
Bio::TreeIO::nhx - TreeIO implementation for parsingNewick/New Hampshire eXtendend (NHX) format.
SYNOPSIS
# do not use this module directly use Bio::TreeIO; my $treeio = Bio::TreeIO->new(-format => 'nhx', -file => 'tree.dnd'); my $tree = $treeio->next_tree;
DESCRIPTION
This module handles parsing and writing of Newick/New Hampshire eXtended (NHX) format.FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted viax the web:http://bugzilla.open-bio.org/
AUTHOR - Aaron Mackey
Email amackey-at-virginia.eduCONTRIBUTORS
Email jason-at-bioperl-dot-orgAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _next_tree
Title : next_tree Usage : my $tree = $treeio->next_tree Function: Gets the next tree in the stream Returns : Bio::Tree::TreeI Args : none
write_tree
Title : write_tree Usage : $treeio->write_tree($tree); Function: Write a tree out to data stream in nhx format Returns : none Args : Bio::Tree::TreeI object
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre