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GO::Model::Seq.3pm

NAME

   GO::Model::Seq - biological sequence
 
 

SYNOPSIS

     print $gene_product->seq->seq;
 
 

DESCRIPTION

represents a biological sequence; uses the bioperl Bio::PrimarySeq class

any call that you can do on a bioperl sequence object, you can do here, with the addition of the calls below

to get bioperl, see http://www.bioperl.org

pseq

   Usage   -
   Returns - Bio::PrimarySeq
   Args    -
 
 

md5checksum

   Usage   - my $md5 = $seq->md5checksum() OR $seq->md5checksum($md5)
   Returns - 32 char hex string
   Args    - 32 char hex string [optional]
 
 

checksum for seq - easy way to check if it has been changed etc

(requires Digest::MD5 module from CPAN)

to_fasta

   Usage   -
   Returns -
   Args    -
 
 

add_xref

   - Usage : $term->add_xref($xref);
   - Args  : GO::Term::Xref