SWISS::GN.3pm

Langue: en

Version: 2006-01-26 (ubuntu - 24/10/10)

Section: 3 (Bibliothèques de fonctions)

Sommaire

Name

SWISS::GN.pm

Description

SWISS::GN represents one gene name from the GN line. The container object for several synonym gene names is SWISS::GeneGroup.

Inherits from

SWISS::BaseClass.pm

Attributes

"text"
One gene name.

Methods

Standard methods

new
fromText
toText

Reading/Writing methods

toMixedCase(@regexps)
Convert gene names to mixed case, according to one or more regular expressions. This is typically useful for converting uppercase ORF numbers to mixed case. E.g. the E.coli gene ``B1563'' converted with the regexp '(b(\d{4}(\.\d)?))' will yield the gene name ``b1563''. The method also supports fused gene names, e.g. ``B0690/B0691'' is converted to ``b0690/b0691''. The method changes the text of the SWISS::GN object and also returns the new text value.