SWISS::GeneGroup.3pm

Langue: en

Version: 2006-01-26 (ubuntu - 24/10/10)

Section: 3 (Bibliothèques de fonctions)

Sommaire

Name

SWISS::GeneGroup.pm

Description

A SWISS::GeneGroup object contain all synonyms for a given gene name. See SWISS::GNs for a description of the gene name format.

Inherits from

SWISS::BaseClass.pm

(also implements many methods from SWISS::ListBase.pm)

Attributes

"Names"
   Each list element is a SWISS::GN object, describing a primary name
   or synonym. Concatenation of Name and Synonyms lists.
"OLN"
   Each list element is a SWISS::GN object, describing an
   OrderedLocusName.
"ORFNames"
   Each list element is a SWISS::GN object, describing an ORFName.

Methods

Standard methods

new
fromText
toText

Specific methods

Name
Returns the Name (primary name).
Synonyms
Returns the Synonyms.
elements
   Concatenates all elements from Names, OLN and ORFNames in
   a single array.

List manipulation methods

Since GeneGroup was a previous implementation of SWISS::ListBase, the list manipulation methods below are provided to facilitate compatibility.
size
isEmpty
elements
filter
get (deprecated)
head (deprecated)
tail (deprecated)
item (deprecated)
push (deprecated)
pop (deprecated)
shift (deprecated)
splice (deprecated)
unshift (deprecated)
set (deprecated)
add (deprecated)