Rechercher une page de manuel
hmmconvert
Langue: en
Version: 371943 (fedora - 01/12/10)
Section: 1 (Commandes utilisateur)
NAME
hmmconvert - convert profile file to a HMMER formatSYNOPSIS
hmmconvert [options] <hmmfile>DESCRIPTION
The hmmconvert utility converts an input profile file to different HMMER formats.
By default, the input profile can be in any HMMER format, including old/obsolete formats from HMMER2, ASCII or binary; the output profile is a current HMMER3 ASCII format.
OPTIONS
- -h
- Help; print a brief reminder of command line usage and all available options.
- -a
- Output profiles in ASCII text format. This is the default.
- -b
- Output profiles in binary format.
- -2
- Output in legacy HMMER2 ASCII text format, in ls (glocal) mode. This allows HMMER3 models to be converted back to a close approximation of HMMER2, for comparative studies.
- --outfmt <s>
- Output in a HMMER3 ASCII text format other then the most current one. Valid choices for <s> are 3/b or 3/a. The current format is 3/b, and this is the default. There is a slightly different format 3/a that was used in some alpha test code.
SEE ALSO
See hmmer(1) for a master man page with a list of all the individual man pages for programs in the HMMER package.
For complete documentation, see the user guide that came with your HMMER distribution (Userguide.pdf); or see the HMMER web page (@HMMER_URL@).
COPYRIGHT
@HMMER_COPYRIGHT@ p@HMMER_LICENSE@
For additional information on copyright and licensing, see the file called COPYRIGHT in your HMMER source distribution, or see the HMMER web page (@HMMER_URL@).
AUTHOR
Eddy/Rivas Laboratory Janelia Farm Research Campus 19700 Helix Drive Ashburn VA 20147 USA http://eddylab.org
"
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre