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Bio::AlignIO::psi.3pm
Langue: en
Version: 2008-01-11 (mandriva - 01/05/08)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::AlignIO::psi - Read/Write PSI-BLAST profile alignment filesSYNOPSIS
This module will parse PSI-BLAST output of the format seqid XXXXDESCRIPTION
This is a parser for psi-blast blocks.FEEDBACK
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AUTHOR - Jason Stajich
Email jason@bioperl.orgAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _new
Title : new Usage : my $obj = new Bio::AlignIO::psi(); Function: Builds a new Bio::AlignIO::psi object Returns : Bio::AlignIO::psi Args :
next_aln
Title : next_aln Usage : $aln = $stream->next_aln() Function: returns the next alignment in the stream Returns : Bio::Align::AlignI object Args : NONE
See Bio::Align::AlignI
write_aln
Title : write_aln Usage : $stream->write_aln(@aln) Function: writes the NCBI psi-format object (.aln) into the stream Returns : 1 for success and 0 for error Args : Bio::Align::AlignI object
Bio::Align::AlignI
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre