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Bio::DB::GFF::Aggregator::coding.3pm
Langue: en
Version: 2009-03-10 (debian - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::DB::GFF::Aggregator::coding -- The Coding Region AggregatorSYNOPSIS
use Bio::DB::GFF; # Open the sequence database my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql', -dsn => 'dbi:mysql:elegans42', -aggregator => ['coding'], ); ------------------------------------------------------------------------ Aggregator method: coding Main method: mRNA Sub methods: CDS ------------------------------------------------------------------------
DESCRIPTION
Bio::DB::GFF::Aggregator::coding aggregates ``CDS'' features into a feature called ``coding'' and was written to be compatible with the Sequence Ontology canonical gene. The CDS features are expected to belong to a parent of type ``mRNA,'' but the aggregator will work even if this isn't the case.method
Title : method Usage : $aggregator->method Function: return the method for the composite object Returns : the string "coding" Args : none Status : Public
part_names
Title : part_names Usage : $aggregator->part_names Function: return the methods for the sub-parts Returns : the list (CDS cds) Args : none Status : Public
main_name
Title : main_name Usage : $aggregator->main_name Function: return the method for the main component Returns : the string "mRNA" Args : none Status : Public
BUGS
None reported.SEE ALSO
Bio::DB::GFF, Bio::DB::GFF::AggregatorAUTHOR
Lincoln Stein <lstein@cshl.org>.Copyright (c) 2001 Cold Spring Harbor Laboratory.
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre