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Bio::DB::GFF::Aggregator::orf.3pm
Langue: en
Version: 2009-02-27 (fedora - 05/07/09)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::DB::GFF::Aggregator::orf -- An aggregator for orf regionsSYNOPSIS
use Bio::DB::GFF; # Open the sequence database my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql', -dsn => 'dbi:mysql:elegans42', -aggregator => ['orf','clone'], ); --------------------------- Aggregator method: orf Main method: -none- Sub methods: ORF ---------------------------
DESCRIPTION
Bio::DB::GFF::Aggregator::orf was written to work with the ``cds'' glyph. GFF files. It aggregates raw ``ORF'' features into ``coding'' features. This is basically identical to the ``coding'' aggregator, except that it looks for features of type ``ORF'' rather than ``cds''.method
Title : method Usage : $aggregator->method Function: return the method for the composite object Returns : the string "orf" Args : none Status : Public
part_names
Title : part_names Usage : $aggregator->part_names Function: return the methods for the sub-parts Returns : the list "CDS" Args : none Status : Public
BUGS
None reported.SEE ALSO
Bio::DB::GFF, Bio::DB::GFF::coding, Bio::DB::GFF::Aggregator, Bio::Graphics::Glyph::cdsAUTHOR
Lincoln Stein <lstein@cshl.org>.Copyright (c) 2001 Cold Spring Harbor Laboratory.
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre