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Bio::LiveSeq::DNA.3pm
Langue: en
Version: 2009-02-27 (fedora - 05/07/09)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::LiveSeq::DNA - DNA object for LiveSeqSYNOPSIS
# documentation needed
DESCRIPTION
This holds the DNA sequence (or the RNA in the case of cDNA entries) and is accessed by exons, genes, transcripts... objectsAUTHOR - Joseph A.L. Insana
Email: Insana@ebi.ac.uk, jinsana@gmx.netAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _new
Title : new Usage : $dna = Bio::LiveSeq::DNA->new(-seq => "atcgaccaatggacctca", -offset => 3 ); Function: generates a new Bio::LiveSeq::DNA Returns : reference to a new object of class DNA Errorcode -1 Args : a string AND an optional offset to create nucleotide labels (default is 1, i.e. starting the count of labels from "1") -> do not bother using it -> it could be used by alternative loaders !EMBL format NOTE : strand of DNA is set to 1 by default
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