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Bio::Search::HSP::FastaHSP.3pm
Langue: en
Version: 2009-02-27 (fedora - 06/07/09)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::Search::HSP::FastaHSP - HSP object for FASTA specific dataSYNOPSIS
# get a FastaHSP from a SearchIO stream my $in = Bio::SearchIO->new(-format => 'fasta', -file => 'filename.fasta'); while( my $r = $in->next_result) { while( my $hit = $r->next_result ) { while( my $hsp = $hit->next_hsp ) { print "smith-waterman score (if available): ", $hsp->sw_score(),"\n"; } } }
DESCRIPTION
Describe the object hereFEEDBACK
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AUTHOR - Jason Stajich
Email jason-at-bioperl.orgAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _new
Title : new Usage : my $obj = Bio::Search::HSP::FastaHSP->new(); Function: Builds a new Bio::Search::HSP::FastaHSP object Returns : Bio::Search::HSP::FastaHSP Args : -swscore => smith-waterman score
sw_score
Title : sw_score Usage : $obj->sw_score($newval) Function: Get/Set Smith-Waterman score Returns : value of sw_score Args : newvalue (optional)
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Design ©2006-2024 Maxime Vantorre