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Bio::TreeIO::svggraph.3pm
Langue: en
Version: 2008-01-11 (mandriva - 01/05/08)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::TreeIO::svggraph - A simple output format that converts a Tree object to an SVG outputSYNOPSIS
use Bio::TreeIO; my $in = new Bio::TreeIO(-file => 'input', -format => 'newick'); my $out = new Bio::TreeIO(-file => '>output', -format => 'svggraph');
while( my $tree = $in->next_tree ) { my $svg_xml = $out->write_tree($tree); }
DESCRIPTION
This outputs a tree as an SVG graphic using the SVG::Graph APIFEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
http://bugzilla.open-bio.org/
AUTHOR - Brian OConnor
Email brian.oconnor-at-excite.comCONTRIBUTORS
Allen Day Guillaume Rousse, Guillaume-dot-Rousse-at-inria-dot-frAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _new
Title : new Usage : my $obj = new Bio::TreeIO::svggraph(); Function: Builds a new Bio::TreeIO::svggraph object Returns : Bio::TreeIO::svggraph Args :-width => image width (default 1600) -height => image height (default 1000) -margin => margin (default 30) -stroke => stroke color (default 'black') -stroke_width=> stroke width (default 2) -font_size=> font size (default '10px') -nomalize => undef or 'log' (default is undef)
write_tree
Title : write_tree Usage : $treeio->write_tree($tree); Function: Write a tree out to data stream in newick/phylip format Returns : none Args : Bio::Tree::TreeI object
decorateRoot
Title : _decorateRoot Usage : internal methods Function: Example : Returns : Args :
next_tree
Title : next_tree Usage : Function: Sorry not possible with this format Returns : none Args : none
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre